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No current obj version currently included does have the RTREE extension defined. You'll have to use the free borland C++ compiler, and compile the obj from the amalgation source from http://sqlite3.org
Another possibility is to use the .obj files to be downloaded from http://synopse.info/files/SQLite3rtree.zip.
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Since the 2010-06-25 source code repository update, the RTREE extension is now compiled by default with the supplied .obj files.
See http://synopse.info/fossil/wiki?name=Get+the+source for the note about getting updated sqlite3*.obj files.
The files listed in the post above are now longer to be used (link should be dead within next major release).
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See http://synopse.info/forum/viewtopic.php?id=310 about the new TSQLRecordRTree class.
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